Package index • DeeDeeExperiment

All functions

dea_info(<DeeDeeExperiment>) `dea_info<-`(<DeeDeeExperiment>) dea_names(<DeeDeeExperiment>) rename_dea(<DeeDeeExperiment>) add_dea(<DeeDeeExperiment>) remove_dea(<DeeDeeExperiment>) dea(<DeeDeeExperiment>) get_dea_list(<DeeDeeExperiment>) add_scenario_info(<DeeDeeExperiment>) fea_info(<DeeDeeExperiment>) `fea_info<-`(<DeeDeeExperiment>) fea_names(<DeeDeeExperiment>) rename_fea(<DeeDeeExperiment>) add_fea(<DeeDeeExperiment>) remove_fea(<DeeDeeExperiment>) fea(<DeeDeeExperiment>) get_fea_list(<DeeDeeExperiment>) link_dea_and_fea(<DeeDeeExperiment>): Methods for DeeDeeExperiment objects

show(<DeeDeeExperiment>) summary(<DeeDeeExperiment>): Miscellaneous DeeDeeExperiment methods

DeeDeeExperiment-package DeeDeeExperiment-pkg: DeeDeeExperiment

DeeDeeExperiment(): The DeeDeeExperiment class

IFNg_both: A sample DESeqResults object

IFNg_naive: A sample DESeqResults object

Salm_both: A sample DESeqResults object

Salm_naive: A sample DESeqResults object

clusterPro_res: clusterPro_res

dd_list_original: dd_list_original

de_limma: A sample MArrayLM object

de_named_list: de_named_list

dge_exact_IFNg_both: A sample DGEExact object

dge_exact_IFNg_naive: A sample DGEExact object

dge_exact_Salm_both: A sample DGEExact object

dge_exact_Salm_naive: A sample DGEExact object

dge_lrt_IFNg_both: A sample DGELRT object

dge_lrt_IFNg_naive: A sample DGELRT object

dge_lrt_Salm_both: A sample DGELRT object

dge_lrt_Salm_naive: A sample DGELRT object

enrichr_res: enrichr_res

fgseaRes: fgseaRes

gost_res: gost_res

gsea_res: gsea_res

supported_fea_formats(): Display available FEA formats

topGO_results_list: topGO_results_list