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Changelog

Source: NEWS.md

DeeDeeExperiment 0.99.0

  • Ready for Bioconductor submission!

DeeDeeExperiment 0.6.0

  • Full vignette now available for user guidance

DeeDeeExperiment 0.5.0

  • Reducing the dependency stack to make the class/package as slim as it can be, with a focus on the full interoperability with SE (therefore now a full dependency)

DeeDeeExperiment 0.4.0

  • New methods to rename DEA and FEA elements in dde objects, get all FEAs for a specific DEA, assign DEA to FEA

  • Method dispatch is now only base on x being DeeDeeExperiment, other arguments are no longer part of the method signature

  • expended supported FEAs: now takes results from topGO, clusterProfiler, enrichR, gProfiler, fgsea, gsea, DAVID, and output of GeneTonic shakers

DeeDeeExperiment 0.3.0

New features

  • Methods to retrieve and manage the fea slot content are established

  • supported FEAs: topGO (data.frame) & enrichResult objects

  • A summary method is included to provide a quick overview of stored DEA and FEA results

DeeDeeExperiment 0.2.0

New features

  • dea() has been refactored for clarity:
    • Now it returns only the main results table, acting as get_dea_df()
    • A new function, dea_info(), has been added to return additional information previously returned by dea()
  • Initial implementation of the fea slot

DeeDeeExperiment 0.1.0

New features