Miscellaneous DeeDeeExperiment methods

Miscellaneous methods for the DeeDeeExperiment class and its descendants that do not fit into any other documentation category such as, for example, show and summary methods.

Usage

# S4 method for class 'DeeDeeExperiment'
show(object)

# S4 method for class 'DeeDeeExperiment'
summary(object, FDR = 0.05, show_scenario_info = FALSE, ...)

Arguments

object

a DeeDeeExperiment object

FDR

Numeric, sets the significance threshold for subsetting differentially expressed genes based on adjusted p-values. Defaults to 0.05

show_scenario_info

Logical; if TRUE, displays the associated scenario info for each DE contrast, if available. Defaults to FALSE

...

additional argument passed to the summary method. Currently supports:

• FDR: Numeric, sets the significance threshold for subsetting differentially expressed genes based on adjusted p-values. Defaults to 0.05

• show_scenario_info: Logical; if TRUE, displays the associated scenario info for each DE contrast, if available.

Value

Returns NULL