Added persistent location to the script that generates the data objects
mosdef 0.99.3
Working on the size and time constraints for the vignette/package to build and check on the BBS
mosdef 0.99.2
Better specification of data objects format and location in the installed folder
mosdef 0.99.1
This version contains the newly implemented changes as a response to the Bioconductor review. In brief, this includes:
renaming the functions (and parameters) to a more consistent style
reduction of the dependencies and runtime of checks/tests
more details on the exported data objects, and on the outputs (detailed in the vignette)
better structure for the vignette with cross-references among sections
modularization of some functions to avoid repetitive code
implementation of an API which is already framework-agnostic, to later accommodate e.g. edgeR/limma. Mainly, this implies the renaming of the dds to a more generic de_container, whereas the res_de parameter stays constant.