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A sample enrichment object, generated in the mosdef and topGO framework

Format

A data.frame object

Source

Details on how this object has been created are included in the create_mosdef_data.R script, included in the (installed) inst/scripts folder of the mosdef package. This is also available at https://github.com/imbeimainz/mosdef/blob/devel/inst/scripts/create_mosdef_data.R

Details

This enrichment object is on the data from the macrophage package.

Specifically, this set of enrichment results was created using the Biological Process ontology, mapping the gene symbol identifiers through the org.Hs.eg.db package.

References

Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.