A sample enrichment object, generated in the mosdef
and goseq
framework
Source
Details on how this object has been created are included in the
create_mosdef_data.R
script, included in the (installed) inst/scripts
folder of the mosdef
package. This is also available at
https://github.com/imbeimainz/mosdef/blob/devel/inst/scripts/create_mosdef_data.R
Details
This enrichment object is on the data from the macrophage
package
Specifically, this set of enrichment results was created using the
Biological Process ontology, mapping the gene symbol identifiers through the
org.Hs.eg.db
package - the gene length information is retrieved by the
internal routines of goseq
.
References
Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.