Package index • KEGGemUP

All functions

cleanup_title_node(): Cleanup the title node from a KEGG igraph object
create_kegg_graph(): Create a graph for a KEGG pathway
display_cache_KEGGemUP(): Return all cached KEGGemUP information
export_kegg_graph(): Export a KEGG graph
get_kegg_db(): Get a KEGG database file
highlight_kegg_graph(): Highlight a subset of the KEGG graph
map_results_to_graph(): Map continuous values to graph nodes
render_kegg_graph(): Create an interactive visualization of KEGG pathways with visNetwork
res_de_macro_IFNg_vs_naive: A sample data.frame containing Differential Expression Analysis, generated with limma
reset_cache_KEGGemUP(): Reset all KEGGemUP caches
retrieve_all_pathways(): Download all pathways
retrieve_kgml(): Download a KGML file
subset_kegg_graph(): Subset a graph object for a KEGG pathway