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A sample data.frame containing Differential Expression Analysis, generated with limma

Source: R/KEGGemUP-data.R
res_de_macro_IFNg_vs_naive.Rd

A sample data.frame containing Differential Expression Analysis, generated with limma

Format

A data.frame object

Value

A sample data.frame object, extracted from the topTable function as a result of running the limma DE workflow

Details

This data.frame object contains the results of a Differential Expression Analysis performed (with limma) on data from the macrophage package, contrasting the counts from naive macrophage to those associated with IFNg.

The code to create said object can be found in the folder /inst/scripts in the KEGGemUP package, the file is called create_deresults.R.

References

Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.