Resources
Our presentations
You can find the links to the slides of the previous meetings linked here.
Our software packages
Over the years, our group has been creating a diverse ensemble of software packages (most of them in R/Bioconductor), which you might find useful for your projects.
Here is a non-comprehensive list of them:
- Our RNA-seq suite: pcaExplorer, ideal, GeneTonic and GeDi, with mosdef under the hood and DeeDeeExperiment to store data and results efficiently!
- iSEE and its whole universe of extensions: iSEEde, iSEEpathways, iSEEhub, iSEEu, iSEEfier - exploring and visualizing data has never been easier!
- Some data packages such as DoReMiTra, HCAData, TabulaMurisSenisData, and HCATonsilData
- quantiseqr and easier for cell type deconvolution
- scaeData and SingleCellAlleleExperiment for looking at expression data at the allele resolution
- cbpManager to manage a cBioPortal instance
- flowcatchR
- ExploreModelMatrix
- bettr
- HuBMAPR
Additional material created by us can be found on the Software page of our group website and in the Teaching section.