Resources

Our presentations

You can find the links to the slides of the previous meetings linked here.

Our software packages

Over the years, our group has been creating a diverse ensemble of software packages (most of them in R/Bioconductor), which you might find useful for your projects.
Here is a non-comprehensive list of them:

• Our RNA-seq suite: pcaExplorer, ideal, GeneTonic and GeDi, with mosdef under the hood
• iSEE and its whole universe of extensions: iSEEde, iSEEpathways, iSEEhub, iSEEu, iSEEfier
• Some data packages such as DoReMiTra, HCAData, TabulaMurisSenisData, and HCATonsilData
• quantiseqr and easier
• scaeData and SingleCellAlleleExperiment
• flowcatchR
• cbpManager
  
• ExploreModelMatrix
• bettr
• HuBMAPR

Additional material created by us can be found on the Software page of our group website and in the Teaching section.