Normalized counts table, with extra info
Usage
deseq_normcounts_with_info(dds, extended_anno_df)
Arguments
- dds
A DESeqDataSet object
- extended_anno_df
An annotation data.frame with the following columns:
gene_id and gene_name (mandatory), and description (optional, can be
retrieved via biomaRt)
Value
A data.frame object, with the normalized counts and some additional
info on the features at hand
Examples
# TODO
# ext_anno <- merge(anno_df, anns, by.x = "gene_id", by.y = "ensembl_gene_id")
# ...
# writexl::write_xlsx(obj, "exceltable.xlsx")