The goal of mosdef is to provides functionality to run a number of tasks in the differential expression analysis workflow.
This encompasses the most widely used steps, from running various enrichment analysis tools with a unified interface to creating plots and beautifying table components linking to external websites and databases.
This streamlines the generation of comprehensive analysis reports.
mosdef can be found on Bioconductor (https://www.bioconductor.org/packages/mosdef).
Installation
You can install the version of mosdef which is ob Bioconductor with these commands:
if (!require("BiocManager")) {
install.packages("BiocManager")
}
BiocManager::install("mosdef")Alternatively, you can install the development version of mosdef from GitHub with:
library("remotes")
remotes::install_github("imbeimainz/mosdef",
dependencies = TRUE, build_vignettes = TRUE)Usage overview
You can find the rendered version of the documentation of mosdef at the project website https://imbeimainz.github.io/mosdef, created with pkgdown.
Development
If you encounter a bug, have usage questions, or want to share ideas and functionality to make this package better, feel free to file an issue.
Code of Conduct
Please note that the mosdef project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.