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A sample list containing Functional Enrichment Analysis results, generated with gprofiler2

Source: R/EMMA-data.R
fea_res.Rd

A sample list containing Functional Enrichment Analysis results, generated with gprofiler2

Format

A list

Value

A sample list containing the FEA results result and metadata. This results object has the EMMA_record attribute.

Details

This list object contains the result table and metadata of the functional enrichment analysis (FEA) performed on the macrophage data, specifically using the gost() function from the gprofiler2 package, and wrapped in EMMA_run()

The code to create said object can be found in the folder /inst/scripts in the EMMA package, the file is called create_datasets_examples.R.

References

Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.